TTA1 class I heat shock protein, putative (DUF1423) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: TTA1
Official Full Name: class I heat shock protein, putative (DUF1423)
Primary source: TAIR:AT1G14740
Locus tag: AT1G14740
See related: Araport:AT1G14740
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F10B6.14; F10B6_14; TITANIA 1
Summary: Encodes a PHD-finger protein that, with TTA1, is redundantly required for MP-dependent embryonic root meristem initiation.
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Genomic context

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See TTA1 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 2

Sequence:: Chromosome: 1; NC_003070.9 (5075179..5077981, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

there is a positive feedback regulation between WUS and OBE3 that contributes to shoot meristem homeostasis. [OBE3]
Title: OBE3 and WUS Interaction in Shoot Meristem Stem Cell Regulation.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_101343.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell fate specification	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within embryonic meristem initiation	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within embryonic pattern specification	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: class I heat shock protein, putative (DUF1423)

NP_563958.1

Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT3G63500.1); Has 415 Blast hits to 414 proteins in 82 species: Archae - 3; Bacteria - 32; Metazoa - 64; Fungi - 8; Plants - 255; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

5075179..5077981 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_101343.2 → NP_563958.1 class I heat shock protein, putative (DUF1423) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_563958.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q94B71, Q9LQV7

UniProtKB/TrEMBL

A0A178W5R5, A0A5S9UFL9

Conserved Domains (2) summary

pfam07227
Location:408 → 532

PHD_Oberon; PHD - plant homeodomain finger protein

pfam16312
Location:628 → 722

Oberon_cc; Coiled-coil region of Oberon