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    jacalin lectin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840271, updated on 18-Sep-2024

    Summary

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    Official Full Name
    jacalin lectin family protein
    Primary source
    TAIR:AT1G33790
    Locus tag
    AT1G33790
    See related
    Araport:AT1G33790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M2.9; F14M2_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (12256474..12260638)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene electron transporter, putative (DUF179) Neighboring gene miscRNA Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene zinc finger/BTB domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The homeodomain-leucine zipper ATHB23, a phytochrome B-interacting protein, is important for phytochrome B-mediated red light signaling. Choi H, et al. Physiol Plant, 2014 Feb. PMID 23964902
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001160918.3
    NM_001333066.1
    NM_103098.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jacalin lectin family protein
    NP_001154390.2
    • jacalin lectin family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G28520.1); Has 2362 Blast hits to 702 proteins in 40 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2347; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_564427.1
    • jacalin lectin family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT2G25980.1); Has 1649 Blast hits to 676 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1641; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12256474..12260638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333063.1 → NP_001321883.1  jacalin lectin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS93, A0A654EEZ9

    2. NM_001333064.1 → NP_001321882.1  jacalin lectin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS94, A0A654EEZ9

    3. NM_001333065.1 → NP_001321880.1  jacalin lectin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASF2, A0A654EEZ9

    4. NM_001160918.3 → NP_001154390.2  jacalin lectin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154390.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HRA7, Q940R1, Q9LQ31
      UniProtKB/TrEMBL
      A0A178W518
      Conserved Domains (2) summary
      smart00915
      Location:465 → 580
      Jacalin; Jacalin-like lectin domain
      pfam01419
      Location:612 → 744
      Jacalin; Jacalin-like lectin domain

    5. NM_103098.2 → NP_564427.1  jacalin lectin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564427.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EEZ9
      Conserved Domains (2) summary
      smart00915
      Location:165 → 280
      Jacalin; Jacalin-like lectin domain
      pfam01419
      Location:312 → 444
      Jacalin; Jacalin-like lectin domain

    6. NM_001333066.1 → NP_001321881.1  jacalin lectin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS89, A0A654EEZ9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQ31.1

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