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    SDG35 SET domain protein 35 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839217, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDG35
    Official Full Name
    SET domain protein 35
    Primary source
    TAIR:AT1G26760
    Locus tag
    AT1G26760
    See related
    Araport:AT1G26760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXR1; SET domain protein 35; T24P13.14; T24P13_14
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    Genomic context

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    See SDG35 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (9248152..9249943, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal L32p protein family Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Arabinanase/levansucrase/invertase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102439.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    SET domain protein 35
    NP_173998.2
    • SET domain protein 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9248152..9249943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102439.3 → NP_173998.2  SET domain protein 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173998.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WP70, A0A654ED33, F4HPB8
      Conserved Domains (3) summary
      sd00006
      Location:73 → 103
      TPR; TPR repeat [structural motif]
      cd20071
      Location:325 → 401
      SET_SMYD; SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins
      pfam00856
      Location:199 → 375
      SET; SET domain
    Nucleotide Protein
    Heading Accession and Version

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