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    hypothetical protein (DUF641) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841774, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF641)
    Primary source
    TAIR:AT1G53380
    Locus tag
    AT1G53380
    See related
    Araport:AT1G53380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12M16.27; F12M16_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (19912990..19916686, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Ubiquitin domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036103.3
    NM_001084242.2
    NM_001333592.1
    NM_001333593.1
    NM_104217.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative gravitropism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to red or far red light IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF641)
    NP_001031180.1
    • Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077711.1
    • Plant protein of unknown function (DUF641); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 313 Blast hits to 310 proteins in 37 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 2; Plants - 281; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_175744.1
    • Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 313 Blast hits to 310 proteins in 37 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 2; Plants - 281; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19912990..19916686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104217.5 → NP_175744.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175744.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
      Conserved Domains (1) summary
      pfam04859
      Location:62 → 187
      DUF641; Plant protein of unknown function (DUF641)

    2. NM_001333592.1 → NP_001320355.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
      Conserved Domains (1) summary
      pfam04859
      Location:62 → 187
      DUF641; Plant protein of unknown function (DUF641)

    3. NM_001084242.2 → NP_001077711.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
      Conserved Domains (1) summary
      pfam04859
      Location:62 → 187
      DUF641; Plant protein of unknown function (DUF641)

    4. NM_001333593.1 → NP_001320356.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
      Conserved Domains (1) summary
      pfam04859
      Location:62 → 187
      DUF641; Plant protein of unknown function (DUF641)

    5. NM_001036103.3 → NP_001031180.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031180.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
      Conserved Domains (1) summary
      pfam04859
      Location:62 → 187
      DUF641; Plant protein of unknown function (DUF641)
    Nucleotide Protein
    Heading Accession and Version

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