U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATRPAC42 DNA-directed RNA polymerase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842377, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ATRPAC42
    Official Full Name
    DNA-directed RNA polymerase family protein
    Primary source
    TAIR:AT1G60850
    Locus tag
    AT1G60850
    See related
    Araport:AT1G60850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AAC42; F23C21.3; F23C21_3; RNA POLYMERASE I SUBUNIT 42
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATRPAC42 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (22397913..22400413, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene tRNA-Gly Neighboring gene ARF-GAP domain 2 Neighboring gene maternal effect embryo arrest 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis. Le MH, et al. PLoS One, 2014. PMID 25036661, Free PMC Article
    2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001333919.1
    NM_104766.5
    NM_179502.4
    NM_202328.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase I activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase III activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-directed RNA polymerase family protein
    NP_176282.1
    • ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1331 Blast hits to 1329 proteins in 354 species: Archae - 245; Bacteria - 1; Metazoa - 283; Fungi - 347; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
    NP_849833.1
    • ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1346 Blast hits to 1344 proteins in 356 species: Archae - 246; Bacteria - 1; Metazoa - 283; Fungi - 361; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
    NP_974057.1
    • ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22397913..22400413 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179502.4 → NP_849833.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849833.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBU3, A0A384LJA0, Q39215, Q9C6C2
      Conserved Domains (1) summary
      cd07032
      Location:74 → 375
      RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III

    2. NM_104766.5 → NP_176282.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176282.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBU3, A0A384LJA0, Q39215, Q9C6C2
      Conserved Domains (1) summary
      cd07032
      Location:74 → 375
      RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III

    3. NM_001333919.1 → NP_001320360.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBU3, A0A384LJA0, Q39215, Q9C6C2
      Conserved Domains (1) summary
      cd07032
      Location:74 → 375
      RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III

    4. NM_202328.3 → NP_974057.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974057.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HRL9
      Conserved Domains (2) summary
      cd07032
      Location:74 → 274
      RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III
      smart00662
      Location:86 → 275
      RPOLD; RNA polymerases D
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools