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    EMB3129 GTP-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828174, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB3129
    Official Full Name
    GTP-binding family protein
    Primary source
    TAIR:AT4G02790
    Locus tag
    AT4G02790
    See related
    Araport:AT4G02790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3129; T5J8.11; T5J8_11
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    Genomic context

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    See EMB3129 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (1247327..1249640)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene photosystem I subunit D-1 Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene GRIP/coiled-coil protein Neighboring gene FANTASTIC four-like protein (DUF3049)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of chloroplast-targeted RbgA GTPase in higher plants. Jeon Y, et al. Plant Mol Biol, 2017 Nov. PMID 29038916
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116513.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    colocalizes_with chloroplast ribosome IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTP-binding family protein
    NP_192188.2
    • GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YlqF (InterPro:IPR019991); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G41670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1247327..1249640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116513.5 → NP_192188.2  GTP-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192188.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1F6, Q8VZ29, Q9SY04
      UniProtKB/TrEMBL
      A0A178V3Z7, A0A5S9XPB5, A0A654FLC7
      Conserved Domains (1) summary
      PRK09563
      Location:97 → 371
      rbgA; GTPase YlqF; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1F6.1

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