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    Transcription initiation factor TFIIE, beta subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827781, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription initiation factor TFIIE, beta subunit
    Primary source
    TAIR:AT4G20330
    Locus tag
    AT4G20330
    See related
    Araport:AT4G20330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9F13.2; F9F13_2
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (10982517..10984521, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Peptidase M50 family protein Neighboring gene CTP synthase family protein Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene oxidoreductase Neighboring gene ncRNA Neighboring gene RAB GTPase homolog E1B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118152.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription initiation factor TFIIE, beta subunit
    NP_193766.1
    • Transcription initiation factor TFIIE, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE, beta subunit (InterPro:IPR016656), Transcription factor TFIIE beta subunit, DNA-binding domain (InterPro:IPR003166); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIIE, beta subunit (TAIR:AT4G21010.1); Has 316 Blast hits to 316 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 101; Plants - 70; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10982517..10984521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118152.2 → NP_193766.1  Transcription initiation factor TFIIE, beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193766.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UVI2, Q9SUP3
      Conserved Domains (1) summary
      cl02153
      Location:57 → 272
      TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    Nucleotide Protein
    Heading Accession and Version

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