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    initiation factor 4F subunit (DUF1350) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823446, updated on 18-Sep-2024

    Summary

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    Official Full Name
    initiation factor 4F subunit (DUF1350)
    Primary source
    TAIR:AT3G43540
    Locus tag
    AT3G43540
    See related
    Araport:AT3G43540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (15430660..15433355)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114222.4
    NM_202650.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    initiation factor 4F subunit (DUF1350)
    NP_189940.1
    • Protein of unknown function (DUF1350); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT5G47860.1); Has 426 Blast hits to 356 proteins in 87 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    NP_974379.1
    • Protein of unknown function (DUF1350); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT5G47860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15430660..15433355
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202650.2 → NP_974379.1  initiation factor 4F subunit (DUF1350) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974379.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IZ56
      Conserved Domains (1) summary
      pfam07082
      Location:12 → 295
      DUF1350; Protein of unknown function (DUF1350)

    2. NM_114222.4 → NP_189940.1  initiation factor 4F subunit (DUF1350) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189940.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EUE4, Q9M236
      Conserved Domains (1) summary
      pfam07082
      Location:64 → 367
      DUF1350; Protein of unknown function (DUF1350)
    Nucleotide Protein
    Heading Accession and Version

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