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    senescence-associated-like protein (DUF581) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825498, updated on 18-Sep-2024

    Summary

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    Official Full Name
    senescence-associated-like protein (DUF581)
    Primary source
    TAIR:AT3G63230
    Locus tag
    AT3G63230
    See related
    Araport:AT3G63230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (23359633..23360338)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mediator of aba-regulated dormancy protein (DUF581) Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions. Jamsheer K M, et al. J Biol Chem, 2018 Aug 24. PMID 29945970, Free PMC Article
    2. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116188.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    senescence-associated-like protein (DUF581)
    NP_001190167.1
    • Protein of unknown function (DUF581); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650).
    NP_191882.2
    • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23359633..23360338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203238.1 → NP_001190167.1  senescence-associated-like protein (DUF581) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190167.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0X4
      Conserved Domains (1) summary
      pfam04570
      Location:33 → 83
      zf-FLZ; zinc-finger of the FCS-type, C2-C2

    2. NM_116188.2 → NP_191882.2  senescence-associated-like protein (DUF581) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191882.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4PSK3
      UniProtKB/TrEMBL
      A0A5S9XP48
      Conserved Domains (1) summary
      pfam04570
      Location:33 → 83
      zf-FLZ; zinc-finger of the FCS-type, C2-C2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4PSK3.1

    Gene LinkOut

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