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    YSL3 YELLOW STRIPE like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835437, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YSL3
    Official Full Name
    YELLOW STRIPE like 3
    Primary source
    TAIR:AT5G53550
    Locus tag
    AT5G53550
    See related
    Araport:AT5G53550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATYSL3; MNC6.9; MNC6_9; YELLOW STRIPE like 3; YELLOW STRIPE LIKE 3
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    Genomic context

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    See YSL3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (21755251..21758950)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene oligopeptide transporter 8 Neighboring gene vacuolar protein sorting 26A Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene cytochrome B5 isoform E Neighboring gene NAD(P)-linked oxidoreductase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alternative functions of Arabidopsis Yellow Stripe-Like3: from metal translocation to pathogen defense. Chen CC, et al. PLoS One, 2014. PMID 24845074, Free PMC Article
    2. Successful reproduction requires the function of Arabidopsis Yellow Stripe-Like1 and Yellow Stripe-Like3 metal-nicotianamine transporters in both vegetative and reproductive structures. Chu HH, et al. Plant Physiol, 2010 Sep. PMID 20625001, Free PMC Article
    3. Whole-plant mineral partitioning throughout the life cycle in Arabidopsis thaliana ecotypes Columbia, Landsberg erecta, Cape Verde Islands, and the mutant line ysl1ysl3. Waters BM, et al. New Phytol, 2008. PMID 18042200
    4. Mutations in Arabidopsis yellow stripe-like1 and yellow stripe-like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds. Waters BM, et al. Plant Physiol, 2006 Aug. PMID 16815956, Free PMC Article
    5. Nematode-induced changes of transporter gene expression in Arabidopsis roots. Hammes UZ, et al. Mol Plant Microbe Interact, 2005 Dec. PMID 16478044

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. This study found that the expression of YSL3 was induced by salicylic acid in an NONEXPRESSOR OF PR1 (NPR1)-dependent pathway and a biological role of YSL3 in the innate immunity of plants was illuminated.
      Title: Alternative functions of Arabidopsis Yellow Stripe-Like3: from metal translocation to pathogen defense.
    2. AtYSL1 and AtYSL3 have dual roles in reproduction.
      Title: Successful reproduction requires the function of Arabidopsis Yellow Stripe-Like1 and Yellow Stripe-Like3 metal-nicotianamine transporters in both vegetative and reproductive structures.
    3. The effects of mutations at YSL1 and YSL3 on mineral metabolism in A. thaliana throughout the life cycle are reported.
      Title: Whole-plant mineral partitioning throughout the life cycle in Arabidopsis thaliana ecotypes Columbia, Landsberg erecta, Cape Verde Islands, and the mutant line ysl1ysl3.
    4. YSL1 and YSL3 are involved in the delivery of metal micronutrients to and from vascular tissues. [AtYSL3]
      Title: Mutations in Arabidopsis yellow stripe-like1 and yellow stripe-like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203603.2
    NM_001345062.1
    NM_001345063.1
    NM_001345064.1
    NM_124735.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables iron-nicotianamine transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within developmental process involved in reproduction IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to nematode HEP PubMed 
    acts_upstream_of_or_within seed development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YELLOW STRIPE like 3
    NP_001190532.1
    • YELLOW STRIPE like 3 (YSL3); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 2 (TAIR:AT5G24380.1).
    NP_200167.2
    • YELLOW STRIPE like 3 (YSL3); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 2 (TAIR:AT5G24380.1); Has 1791 Blast hits to 1736 proteins in 561 species: Archae - 19; Bacteria - 890; Metazoa - 0; Fungi - 282; Plants - 448; Viruses - 1; Other Eukaryotes - 151 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21755251..21758950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345061.1 → NP_001332081.1  YELLOW STRIPE like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVQ4, Q2EF88, Q9FJC8
      UniProtKB/TrEMBL
      A0A178U7D6, A0A7G2FIW9
      Conserved Domains (1) summary
      pfam03169
      Location:41 → 656
      OPT; OPT oligopeptide transporter protein

    2. NM_001203603.2 → NP_001190532.1  YELLOW STRIPE like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190532.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVQ4, Q2EF88, Q9FJC8
      UniProtKB/TrEMBL
      A0A178U7D6, A0A7G2FIW9
      Conserved Domains (1) summary
      pfam03169
      Location:41 → 656
      OPT; OPT oligopeptide transporter protein

    3. NM_001345062.1 → NP_001332079.1  YELLOW STRIPE like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFW1
      Conserved Domains (1) summary
      pfam03169
      Location:1 → 494
      OPT; OPT oligopeptide transporter protein

    4. NM_124735.4 → NP_200167.2  YELLOW STRIPE like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200167.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVQ4, Q2EF88, Q9FJC8
      UniProtKB/TrEMBL
      A0A178U7D6, A0A7G2FIW9
      Conserved Domains (1) summary
      pfam03169
      Location:41 → 656
      OPT; OPT oligopeptide transporter protein

    5. NM_001345063.1 → NP_001332080.1  YELLOW STRIPE like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVQ4, Q2EF88, Q9FJC8
      UniProtKB/TrEMBL
      A0A178U7D6, A0A7G2FIW9
      Conserved Domains (1) summary
      pfam03169
      Location:41 → 656
      OPT; OPT oligopeptide transporter protein

    6. NM_001345064.1 → NP_001332078.1  YELLOW STRIPE like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVQ4, Q2EF88, Q9FJC8
      UniProtKB/TrEMBL
      A0A178U7D6, A0A7G2FIW9
      Conserved Domains (1) summary
      pfam03169
      Location:41 → 656
      OPT; OPT oligopeptide transporter protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2EF88.1

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