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    NRPC1 nuclear RNA polymerase C1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836126, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NRPC1
    Official Full Name
    nuclear RNA polymerase C1
    Primary source
    TAIR:AT5G60040
    Locus tag
    AT5G60040
    See related
    Araport:AT5G60040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGO3.13; MGO3_13; nuclear RNA polymerase C1
    Summary
    Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
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    Genomic context

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    See NRPC1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    29
    Sequence:
    Chromosome: 5; NC_003076.8 (24173259..24183641)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene laccase 17 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA Neighboring gene F-box SKIP23-like protein (DUF295)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125397.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear RNA polymerase C1
    NP_001190573.1
    • nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1).
    NP_200812.2
    • nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24173259..24183641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203644.1 → NP_001190573.1  nuclear RNA polymerase C1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190573.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UF03, F4JXF8
      Conserved Domains (4) summary
      cd02736
      Location:1029 → 1369
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      PRK08566
      Location:20 → 947
      PRK08566; DNA-directed RNA polymerase subunit A'; Validated
      cd02583
      Location:31 → 909
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
      pfam04998
      Location:859 → 1327
      RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

    2. NM_125397.3 → NP_200812.2  nuclear RNA polymerase C1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200812.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JXF9, Q9LVH0
      UniProtKB/TrEMBL
      A0A178UF03, A0A5S9YGT2, A0A654GD29
      Conserved Domains (3) summary
      cd02736
      Location:1012 → 1354
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      CHL00117
      Location:842 → 1075
      rpoC2; RNA polymerase beta'' subunit; Reviewed
      cd02583
      Location:31 → 892
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JXF9.1

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