U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SCAMP3 Secretory carrier membrane protein (SCAMP) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816617, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SCAMP3
    Official Full Name
    Secretory carrier membrane protein (SCAMP) family protein
    Primary source
    TAIR:AT2G20840
    Locus tag
    AT2G20840
    See related
    Araport:AT2G20840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSCAMP3; F5H14.19; F5H14_19; Secretory carrier membrane protein 3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SCAMP3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (8971696..8974555, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene folic acid binding / transferase Neighboring gene uncharacterized protein Neighboring gene STRUBBELIG-receptor family 1 Neighboring gene lipoic acid synthase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_127653.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Secretory carrier membrane protein (SCAMP) family protein
    NP_179680.1
    • Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G03550.1); Has 686 Blast hits to 684 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 230; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8971696..8974555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335712.1 → NP_001323533.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSQ3, A0A1P8AXH0
      Conserved Domains (2) summary
      pfam03879
      Location:9 → 38
      Cgr1; Cgr1 family
      pfam04144
      Location:48 → 220
      SCAMP; SCAMP family

    2. NM_001335711.1 → NP_001323534.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSQ3, A0A1P8AXH0
      Conserved Domains (2) summary
      pfam03879
      Location:9 → 38
      Cgr1; Cgr1 family
      pfam04144
      Location:48 → 220
      SCAMP; SCAMP family

    3. NM_127653.5 → NP_179680.1  Secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179680.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SKT3
      UniProtKB/TrEMBL
      A0A178VSQ3, A0A5S9WZY0, A0A654EUM0
      Conserved Domains (2) summary
      pfam03879
      Location:52 → 81
      Cgr1; Cgr1 family
      pfam04144
      Location:91 → 263
      SCAMP; SCAMP family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SKT3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools