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    BPC4 basic pentacysteine 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816663, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPC4
    Official Full Name
    basic pentacysteine 4
    Primary source
    TAIR:AT2G21240
    Locus tag
    AT2G21240
    See related
    Araport:AT2G21240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPC4; basic pentacysteine 4; BASIC PENTACYSTEINE 4; BBR; F7O24.4; F7O24_4
    Summary
    Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.
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    Genomic context

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    See BPC4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (9101277..9103141, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene uncharacterized protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene ubiquitin fusion degradation 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus. Wanke D, et al. PLoS One, 2011 Feb 10. PMID 21347358, Free PMC Article
    2. Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis. Monfared MM, et al. Plant J, 2011 Jun. PMID 21435046
    3. Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Meister RJ, et al. Plant J, 2004 Feb. PMID 14731261
    4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_127696.4
    NM_179681.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of developmental process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ethylene IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    basic pentacysteine 4
    NP_565503.1
    • basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_850012.1
    • basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9101277..9103141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127696.4 → NP_565503.1  basic pentacysteine 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565503.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6U1M9, Q8S8C6
      UniProtKB/TrEMBL
      A0A178VSW9, A0A5S9WZV7
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 296
      GAGA_bind; GAGA binding protein-like family

    2. NM_179681.2 → NP_850012.1  basic pentacysteine 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850012.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6U1M9, Q8S8C6
      UniProtKB/TrEMBL
      A0A178VSW9, A0A5S9WZV7
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 296
      GAGA_bind; GAGA binding protein-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8C6.1

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