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    GEA6 Stress induced protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818608, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GEA6
    Official Full Name
    Stress induced protein
    Primary source
    TAIR:AT2G40170
    Locus tag
    AT2G40170
    See related
    Araport:AT2G40170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS EARLY METHIONINE-LABELLED 6; ATEM6; EARLY METHIONINE-LABELLED 6; EM6; LATE EMBRYOGENESIS ABUNDANT 6; T7M7.23
    Summary
    Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.
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    Genomic context

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    See GEA6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16779552..16780368, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 28 Neighboring gene uncharacterized protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene phosphatase 2C5 Neighboring gene UDP-Glycosyltransferase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Seed dehydration and the establishment of desiccation tolerance during seed maturation is altered in the Arabidopsis thaliana mutant atem6-1. Manfre AJ, et al. Plant Cell Physiol, 2009 Feb. PMID 19073649
    2. The Arabidopsis group 1 LATE EMBRYOGENESIS ABUNDANT protein ATEM6 is required for normal seed development. Manfre AJ, et al. Plant Physiol, 2006 Jan. PMID 16361514, Free PMC Article
    3. Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation. Gaubier P, et al. Mol Gen Genet, 1993 Apr. PMID 8492809
    4. Physical interactions between ABA response loci of Arabidopsis. Nakamura S, et al. Plant J, 2001 Jun. PMID 11489176
    5. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ATEM6 protein is not required in mature seeds for viability or efficient germination, and absence of ATEM6 results in accelerated acquisition of desiccation tolerance in mutant seeds.
      Title: Seed dehydration and the establishment of desiccation tolerance during seed maturation is altered in the Arabidopsis thaliana mutant atem6-1.
    2. One possible function for ATEM6 in seed development is to buffer the water loss that occurs during embryo maturation.
      Title: The Arabidopsis group 1 LATE EMBRYOGENESIS ABUNDANT protein ATEM6 is required for normal seed development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129575.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within acquisition of desiccation tolerance in seed IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Stress induced protein
    NP_181546.1
    • LATE EMBRYOGENESIS ABUNDANT 6 (GEA6); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 5, conserved site (InterPro:IPR022377), Stress induced protein (InterPro:IPR000389); BEST Arabidopsis thaliana protein match is: Stress induced protein (TAIR:AT3G51810.1); Has 212 Blast hits to 184 proteins in 37 species: Archae - 0; Bacteria - 6; Metazoa - 17; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16779552..16780368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129575.3 → NP_181546.1  Stress induced protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181546.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q02973
      UniProtKB/TrEMBL
      A0A178VV76, A0A5S9X5M3, Q39095
      Conserved Domains (1) summary
      pfam00477
      Location:2 → 88
      LEA_5; Small hydrophilic plant seed protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q02973.1

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