GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: GDSL-like Lipase/Acylhydrolase superfamily protein
Primary source: TAIR:AT1G75920
Locus tag: AT1G75920
See related: Araport:AT1G75920
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T4O12.14; T4O12_14
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 6

Sequence:: Chromosome: 1; NC_003070.9 (28504041..28507168)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001084361.2

Supported by ESTs:

NM_001084362.1

Supported by ESTs:

NM_001124133.2

Supported by ESTs:

NM_106242.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables acyltransferase activity	TAS Traceable Author Statement more info	PubMed
enables lipase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in lipid metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in extracellular region	IMP Inferred from Mutant Phenotype more info	PubMed
located_in pollen coat	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: GDSL-like Lipase/Acylhydrolase superfamily protein

NP_001077830.1

GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: extracellular lipase 4 (TAIR:AT1G75910.1); Has 3237 Blast hits to 3203 proteins in 172 species: Archae - 0; Bacteria - 219; Metazoa - 0; Fungi - 34; Plants - 2972; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NP_001077831.1

GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: extracellular lipase 4 (TAIR:AT1G75910.1); Has 3123 Blast hits to 3087 proteins in 157 species: Archae - 0; Bacteria - 173; Metazoa - 0; Fungi - 33; Plants - 2908; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NP_001117605.1

GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: extracellular lipase 4 (TAIR:AT1G75910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_565122.1

GDSL-like Lipase/Acylhydrolase superfamily protein; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: extracellular lipase 4 (TAIR:AT1G75910.1); Has 3181 Blast hits to 3145 proteins in 149 species: Archae - 0; Bacteria - 161; Metazoa - 0; Fungi - 26; Plants - 2987; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

28504041..28507168

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001124133.2 → NP_001117605.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001117605.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654EQY1

Conserved Domains (1) summary

cd01837
Location:19 → 310

SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...
NM_001084361.2 → NP_001077830.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001077830.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2E6C0

Conserved Domains (1) summary

cd01837
Location:28 → 338

SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...
NM_001084362.1 → NP_001077831.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001077831.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2E6C0

Conserved Domains (1) summary

cd01837
Location:28 → 307

SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...
NM_106242.2 → NP_565122.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_565122.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A8MR69, B3H6N8, Q1PFC8, Q94CH5, Q9LQS4

UniProtKB/TrEMBL

F4I0R0

Conserved Domains (1) summary

cd01837
Location:23 → 348

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...