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    UBX domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838019, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UBX domain-containing protein
    Primary source
    TAIR:AT1G14570
    Locus tag
    AT1G14570
    See related
    Araport:AT1G14570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPUX7; plant UBX domain-containing protein 7; PUX7; T5E21.7; T5E21_7
    Summary
    Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (4983489..4987375)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene C2H2-like zinc finger protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gallois JL, et al. Gene, 2013 Sep 10. PMID 23747397
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084066.1
    NM_001084067.1
    NM_101324.4
    NM_202098.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UBX domain-containing protein
    NP_001077535.1
    • UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    NP_001077536.1
    • UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    NP_563954.1
    • UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2); Has 594 Blast hits to 577 proteins in 178 species: Archae - 0; Bacteria - 4; Metazoa - 212; Fungi - 143; Plants - 155; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
    NP_973827.1
    • UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4983489..4987375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101324.4 → NP_563954.1  UBX domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563954.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JZ8, Q9MA26
      UniProtKB/TrEMBL
      A0A5S9UEB3, A0A654E9Y3
      Conserved Domains (3) summary
      cd02958
      Location:182 → 294
      UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
      cd01767
      Location:391 → 463
      UBX; Ubiquitin regulatory domain X (UBX) structurally similar to a beta-grasp ubiquitin-like fold
      pfam14555
      Location:13 → 53
      UBA_4; UBA-like domain

    2. NM_001084066.1 → NP_001077535.1  UBX domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077535.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5W8, A8MRM0
      Conserved Domains (3) summary
      cd02958
      Location:161 → 273
      UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
      pfam14555
      Location:13 → 53
      UBA_4; UBA-like domain
      cl00155
      Location:368 → 425
      UBQ; Ubiquitin-like proteins

    3. NM_001084067.1 → NP_001077536.1  UBX domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077536.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5W8, A8MRM0
      Conserved Domains (3) summary
      cd02958
      Location:161 → 273
      UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
      pfam14555
      Location:13 → 53
      UBA_4; UBA-like domain
      cl00155
      Location:368 → 425
      UBQ; Ubiquitin-like proteins

    4. NM_202098.3 → NP_973827.1  UBX domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973827.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JZ8, Q9MA26
      UniProtKB/TrEMBL
      A0A5S9UEB3, A0A654E9Y3
      Conserved Domains (3) summary
      cd02958
      Location:182 → 294
      UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
      cd01767
      Location:391 → 463
      UBX; Ubiquitin regulatory domain X (UBX) structurally similar to a beta-grasp ubiquitin-like fold
      pfam14555
      Location:13 → 53
      UBA_4; UBA-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94JZ8.1

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