U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Signal recognition particle, SRP9/SRP14 subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818966, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Signal recognition particle, SRP9/SRP14 subunit
    Primary source
    TAIR:AT2G43640
    Locus tag
    AT2G43640
    See related
    Araport:AT2G43640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O19.25
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (18097400..18099136, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Chitinase family protein Neighboring gene nucleusenvelope protein Neighboring gene ncRNA Neighboring gene Sas10/U3 ribonucleoprotein (Utp) family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084581.2
    NM_129926.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables endoplasmic reticulum signal peptide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Signal recognition particle, SRP9/SRP14 subunit
    NP_001078050.1
    • Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, endoplasmic reticulum signal peptide binding, RNA binding; INVOLVED IN: negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP14 subunit (InterPro:IPR003210), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018); Has 216 Blast hits to 216 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 35; Plants - 46; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    NP_001189744.1
    • Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: endoplasmic reticulum signal peptide binding, 7S RNA binding, RNA binding; INVOLVED IN: negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP14 subunit (InterPro:IPR003210), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018).
    NP_181892.1
    • Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, endoplasmic reticulum signal peptide binding, RNA binding; INVOLVED IN: negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP14 subunit (InterPro:IPR003210), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018); Has 216 Blast hits to 216 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 35; Plants - 46; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18097400..18099136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202815.1 → NP_001189744.1  Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189744.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IS20
      Conserved Domains (1) summary
      pfam02290
      Location:4 → 84
      SRP14; Signal recognition particle 14kD protein

    2. NM_129926.2 → NP_181892.1  Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181892.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04421, O22839, Q53YG7
      UniProtKB/TrEMBL
      A0A178VRJ8, A0A384KGJ4, B9DGY4
      Conserved Domains (1) summary
      pfam02290
      Location:4 → 93
      SRP14; Signal recognition particle 14kD protein

    3. NM_001084581.2 → NP_001078050.1  Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078050.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04421, O22839, Q53YG7
      UniProtKB/TrEMBL
      A0A178VRJ8, A0A384KGJ4, B9DGY4
      Conserved Domains (1) summary
      pfam02290
      Location:4 → 93
      SRP14; Signal recognition particle 14kD protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04421.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools