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    GER1 germin-like protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843593, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GER1
    Official Full Name
    germin-like protein 1
    Primary source
    TAIR:AT1G72610
    Locus tag
    AT1G72610
    See related
    Araport:AT1G72610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA GERMIN-LIKE PROTEIN 1; ATGER1; F28P22.20; F28P22_20; germin-like protein 1; GERMIN-LIKE PROTEIN 1; GLP1
    Summary
    germin-like protein (GLP1)
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    Genomic context

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    See GER1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (27339114..27340044, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ELF4-like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana germin-like proteins: common and specific features point to a variety of functions. Membré N, et al. Planta, 2000 Aug. PMID 10987552
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105920.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT enables oxalate oxidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    germin-like protein 1
    NP_177405.1
    • germin-like protein 1 (GER1); INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin 3 (TAIR:AT5G20630.1); Has 1559 Blast hits to 1557 proteins in 130 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 43; Plants - 1420; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27339114..27340044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105920.2 → NP_177405.1  germin-like protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177405.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04751, P94040, Q96265
      UniProtKB/TrEMBL
      A0A178WCD6, A0A384L3S4, Q549N9, Q8VZ99
      Conserved Domains (1) summary
      cd02241
      Location:19 → 204
      cupin_OxOx; Oxalate oxidase (germin), cupin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P94040.1

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