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    Coatomer, beta' subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841666, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Coatomer, beta' subunit
    Primary source
    TAIR:AT1G52360
    Locus tag
    AT1G52360
    See related
    Araport:AT1G52360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K6.16; F19K6_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    25
    Sequence:
    Chromosome: 1; NC_003070.9 (19499146..19506309)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA-Arg Neighboring gene Ribosomal protein L22p/L17e family protein Neighboring gene NUP50 (Nucleoporin 50 kDa) protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198274.2
    NM_001333538.1
    NM_001333539.1
    NM_104114.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Coatomer, beta' subunit
    NP_001185203.1
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).
    NP_175645.1
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3); Has 77726 Blast hits to 33438 proteins in 848 species: Archae - 64; Bacteria - 8410; Metazoa - 31451; Fungi - 17403; Plants - 9943; Viruses - 42; Other Eukaryotes - 10413 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19499146..19506309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104114.3 → NP_175645.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175645.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GX79, Q9C827
      UniProtKB/TrEMBL
      A0A5S9WL94, A0A654EJ89
      Conserved Domains (4) summary
      COG2319
      Location:24 → 474
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam04053
      Location:320 → 764
      Coatomer_WDAD; Coatomer WD associated region
      sd00039
      Location:103 → 140
      7WD40; WD40 repeat [structural motif]

    2. NM_001333538.1 → NP_001322820.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV73, A0A5S9WL94, A0A654EJ89

    3. NM_001333539.1 → NP_001322821.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GX79, Q9C827
      UniProtKB/TrEMBL
      A0A5S9WL94, A0A654EJ89

    4. NM_001198274.2 → NP_001185203.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185203.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ89, F4ICX0
      Conserved Domains (4) summary
      COG2319
      Location:41 → 518
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:61 → 341
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam04053
      Location:364 → 808
      Coatomer_WDAD; Coatomer WD associated region
      sd00039
      Location:147 → 184
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C827.1

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