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    SDG20 SET domain protein 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821169, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDG20
    Official Full Name
    SET domain protein 20
    Primary source
    TAIR:AT3G03750
    Locus tag
    AT3G03750
    See related
    Araport:AT3G03750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20H23.22; F20H23_22; SET domain protein 20; SUVR3
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    Genomic context

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    See SDG20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (939900..942094)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein, putative (DUF295) Neighboring gene F-box/kelch-repeat protein, putative (DUF295) Neighboring gene BTB-POZ and MATH domain 4 Neighboring gene LOB domain-containing protein 20 Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111246.3
    NM_202483.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SET domain protein 20
    NP_187025.2
    • SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 3083 Blast hits to 3057 proteins in 283 species: Archae - 0; Bacteria - 58; Metazoa - 1675; Fungi - 416; Plants - 716; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
    NP_974212.1
    • SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (TAIR:AT2G23740.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      939900..942094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202483.2 → NP_974212.1  SET domain protein 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974212.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV96, Q1HAZ4, Q7Y033, Q9SRV2
      UniProtKB/TrEMBL
      A0A178VPK9, A0A5S9X9E7, A0A7G2EI38
      Conserved Domains (2) summary
      cl40432
      Location:141 → 323
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
      pfam05033
      Location:70 → 183
      Pre-SET; Pre-SET motif

    2. NM_111246.3 → NP_187025.2  SET domain protein 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187025.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPK9, A0A7G2EI38
      Conserved Domains (3) summary
      smart00570
      Location:141 → 190
      AWS; associated with SET domains
      smart00317
      Location:191 → 310
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam05033
      Location:70 → 183
      Pre-SET; Pre-SET motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRV2.4

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