U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820912, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT3G16610
    Locus tag
    AT3G16610
    See related
    Araport:AT3G16610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5656215..5658335, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein Neighboring gene translocon outer complex protein 120 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene translationally controlled tumor protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts. Brehme N, et al. Mitochondrion, 2020 Jul. PMID 32439621
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts.
      Title: MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_112534.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_188283.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 44074 Blast hits to 13558 proteins in 215 species: Archae - 0; Bacteria - 6; Metazoa - 87; Fungi - 74; Plants - 43358; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5656215..5658335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112534.2 → NP_188283.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188283.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUS3
      UniProtKB/TrEMBL
      A0A5S9XCR3, A0A654F8V5
      Conserved Domains (2) summary
      PLN03077
      Location:2 → 654
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:477 → 504
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUS3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools