U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Sec23/Sec24 protein transport family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821946, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Sec23/Sec24 protein transport family protein
    Primary source
    TAIR:AT3G23660
    Locus tag
    AT3G23660
    See related
    Araport:AT3G23660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (8513453..8517944, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene kinase-like protein Neighboring gene ncRNA Neighboring gene phragmoplast-associated kinesin-related protein Neighboring gene F-box associated ubiquitination effector family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis COPII components, AtSEC23A and AtSEC23D, are essential for pollen wall development and exine patterning. Aboulela M, et al. J Exp Bot, 2018 Mar 24. PMID 29390074, Free PMC Article
    2. Endomembrane trafficking protein SEC24A regulates cell size patterning in Arabidopsis. Qu X, et al. Plant Physiol, 2014 Dec. PMID 25315606, Free PMC Article
    3. The transport signal on Sec22 for packaging into COPII-coated vesicles is a conformational epitope. Mancias JD, et al. Mol Cell, 2007 May 11. PMID 17499046
    4. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtSEC23A and AtSEC23D may organize pollen wall development and exine patterning by regulating ER export of lipids and proteins necessary for pollen wall formation.
      Title: The Arabidopsis COPII components, AtSEC23A and AtSEC23D, are essential for pollen wall development and exine patterning.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001203027.1
    NM_113270.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Sec23/Sec24 protein transport family protein
    NP_001189956.1
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2).
    NP_189008.1
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8513453..8517944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113270.5 → NP_189008.1  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189008.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEK5, Q9LUG1
      UniProtKB/TrEMBL
      A0A384KXP3, A0A5S9XF42
      Conserved Domains (1) summary
      PLN00162
      Location:7 → 765
      PLN00162; transport protein sec23; Provisional

    2. NM_001203027.1 → NP_001189956.1  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189956.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XF42, F4J462
      Conserved Domains (6) summary
      cd11287
      Location:639 → 759
      Sec23_C; C-terminal Actin depolymerization factor-homology domain of Sec23
      PLN00162
      Location:7 → 791
      PLN00162; transport protein sec23; Provisional
      cd01478
      Location:130 → 391
      Sec23-like; Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
      pfam04810
      Location:56 → 93
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:525 → 643
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:403 → 506
      Sec23_BS; Sec23/Sec24 beta-sandwich domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUG1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools