U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SEC5A exocyst complex component sec5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844020, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SEC5A
    Official Full Name
    exocyst complex component sec5
    Primary source
    TAIR:AT1G76850
    Locus tag
    AT1G76850
    See related
    Araport:AT1G76850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    exocyst complex component sec5; F7O12.2; F7O12_2
    Summary
    Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SEC5A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Sequence:
    Chromosome: 1; NC_003070.9 (28847871..28854499)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene transcription factor Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole. Kulich I, et al. Traffic, 2013 Nov. PMID 23944713
    2. The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction. Pecenková T, et al. J Exp Bot, 2011 Mar. PMID 21199889, Free PMC Article
    3. Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals. Ding Y, et al. Mol Biol Cell, 2014 Feb. PMID 24307681, Free PMC Article
    4. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Hála M, et al. Plant Cell, 2008 May. PMID 18492870, Free PMC Article
    5. BYPASS1-LIKE regulates lateral root initiation via exocytic vesicular trafficking-mediated PIN recycling in Arabidopsis. Yang G, et al. J Integr Plant Biol, 2022 May. PMID 35249253

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_106336.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within acceptance of pollen IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of exocyst IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular exosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exocyst complex component sec5
    NP_177811.2
    • exocyst complex component sec5 (SEC5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Exocyst complex component SEC5 (TAIR:AT1G21170.1); Has 532 Blast hits to 503 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 234; Fungi - 147; Plants - 83; Viruses - 4; Other Eukaryotes - 62 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28847871..28854499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106336.4 → NP_177811.2  exocyst complex component sec5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177811.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WL36, Q541W6, Q8S3U9, Q9C6K6
      UniProtKB/TrEMBL
      A0A178WKT0
      Conserved Domains (1) summary
      pfam15469
      Location:267 → 443
      Sec5; Exocyst complex component Sec5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S3U9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools