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    MYB52 myb domain protein 52 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838374, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB52
    Official Full Name
    myb domain protein 52
    Primary source
    TAIR:AT1G17950
    Locus tag
    AT1G17950
    See related
    Araport:AT1G17950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB52; BW52; F2H15.17; F2H15_17; myb domain protein 52; MYB DOMAIN PROTEIN 52
    Summary
    putative transcription factor: R2R3-MYB transcription family
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    Genomic context

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    See MYB52 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6177481..6179289)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Aminotransferase-like, plant mobile domain family protein Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene Threonyl-tRNA synthetase Neighboring gene RING/U-box superfamily protein Neighboring gene poly(A) polymerase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage. Shi D, et al. Plant Physiol, 2018 Apr. PMID 29440562, Free PMC Article
    2. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Cassan-Wang H, et al. Front Plant Sci, 2013. PMID 23781226, Free PMC Article
    3. Overexpression of AtMYB52 confers ABA hypersensitivity and drought tolerance. Park MY, et al. Mol Cells, 2011 May. PMID 21399993, Free PMC Article
    4. ERF4 and MYB52 transcription factors play antagonistic roles in regulating homogalacturonan de-methylesterification in Arabidopsis seed coat mucilage. Ding A, et al. Plant Cell, 2021 Apr 17. PMID 33709105, Free PMC Article
    5. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Kranz HD, et al. Plant J, 1998 Oct. PMID 9839469

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ERF4 and MYB52 transcription factors play antagonistic roles in regulating homogalacturonan de-methylesterification in Arabidopsis seed coat mucilage.
      Title: ERF4 and MYB52 transcription factors play antagonistic roles in regulating homogalacturonan de-methylesterification in Arabidopsis seed coat mucilage.
    2. Decreased methylesterification in the myb52 mutant is correlated with an increase in the calcium content of the seed mucilage.
      Title: MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101658.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant-type secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 52
    NP_173237.1
    • myb domain protein 52 (MYB52); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 54 (TAIR:AT1G73410.1); Has 8890 Blast hits to 7951 proteins in 553 species: Archae - 0; Bacteria - 0; Metazoa - 901; Fungi - 603; Plants - 5404; Viruses - 5; Other Eukaryotes - 1977 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6177481..6179289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101658.3 → NP_173237.1  myb domain protein 52 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173237.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6R0C4, Q8LCC8, Q9LMT5, Q9ZTD9
      UniProtKB/TrEMBL
      A0A178WDN0, A0A5S9UZC8, A0A654ECB5
      Conserved Domains (1) summary
      PLN03091
      Location:5 → 117
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R0C4.1

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