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    PSAD-1 photosystem I subunit D-1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828183, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSAD-1
    Official Full Name
    photosystem I subunit D-1
    Primary source
    TAIR:AT4G02770
    Locus tag
    AT4G02770
    See related
    Araport:AT4G02770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    photosystem I subunit D-1; PSI-D
    Summary
    Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)
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    Genomic context

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    See PSAD-1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (1229031..1230164, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene RNI-like superfamily protein Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene GTP-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis. DalCorso G, et al. Cell, 2008 Jan 25. PMID 18243102
    2. Identification of novel seed longevity genes related to oxidative stress and seed coat by genome-wide association studies and reverse genetics. Renard J, et al. Plant Cell Environ, 2020 Oct. PMID 32519347
    3. PsbP-domain protein1, a nuclear-encoded thylakoid lumenal protein, is essential for photosystem I assembly in Arabidopsis. Liu J, et al. Plant Cell, 2012 Dec. PMID 23221595, Free PMC Article
    4. Light-harvesting complex II binds to several small subunits of photosystem I. Zhang S, et al. J Biol Chem, 2004 Jan 30. PMID 14617624
    5. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116511.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within acquisition of seed longevity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosol HDA PubMed 
    part_of photosystem I reaction center IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plastoglobule HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    photosystem I subunit D-1
    NP_192186.1
    • photosystem I subunit D-1 (PSAD-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: photosystem I subunit D-2 (TAIR:AT1G03130.1); Has 510 Blast hits to 510 proteins in 137 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 3; Other Eukaryotes - 198 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1229031..1230164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116511.4 → NP_192186.1  photosystem I subunit D-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192186.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9B6, Q9S7H1
      UniProtKB/TrEMBL
      A0A178UV45, A0A5S9XQ39
      Conserved Domains (1) summary
      PLN00041
      Location:11 → 208
      PLN00041; photosystem I reaction center subunit II; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7H1.1

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