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    PUM15 pumilio 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826417, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM15
    Official Full Name
    pumilio 15
    Primary source
    TAIR:AT4G08560
    Locus tag
    AT4G08560
    See related
    Araport:AT4G08560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM15; pumilio 15; T15F16.9; T15F16_9
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM15 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (5450434..5453183)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene electron carrier/ protein disulfide oxidoreductase Neighboring gene uncharacterized protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene microfibrillar-associated protein-like protein Neighboring gene ORTHRUS-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pumilio 15
    NP_192596.1
    • pumilio 15 (PUM15); FUNCTIONS IN: RNA binding, binding; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Plant self-incompatibility S1 (InterPro:IPR010264), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 13 (TAIR:AT5G43090.1); Has 2363 Blast hits to 1592 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 534; Fungi - 743; Plants - 651; Viruses - 0; Other Eukaryotes - 435 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      5450434..5453183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116925.1 → NP_192596.1  pumilio 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192596.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DN94
      Conserved Domains (2) summary
      cd07920
      Location:138 → 464
      Pumilio; Pumilio-family RNA binding domain
      pfam05938
      Location:23 → 92
      Self-incomp_S1; Plant self-incompatibility protein S1
    Nucleotide Protein
    Heading Accession and Version

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