U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ELP6 elongator protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826600, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ELP6
    Official Full Name
    elongator protein 6
    Primary source
    TAIR:AT4G10090
    Locus tag
    AT4G10090
    See related
    Araport:AT4G10090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    elongator protein 6; F28M11.10; F28M11_10
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ELP6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (6305320..6307552)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Beta-glucosidase, GBA2 type family protein Neighboring gene KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene co-factor for nitrate, reductase and xanthine dehydrogenase 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Meta-regulation of Arabidopsis auxin responses depends on tRNA maturation. Leitner J, et al. Cell Rep, 2015 Apr 28. PMID 25892242, Free PMC Article
    2. MODULATOR OF PIN genes control steady-state levels of Arabidopsis PIN proteins. Malenica N, et al. Plant J, 2007 Aug. PMID 17651372
    3. Evolutionary Conservation in Protein-Protein Interactions and Structures of the Elongator Sub-Complex ELP456 from Arabidopsis and Yeast. Jun SE, et al. Int J Mol Sci, 2024 Apr 15. PMID 38673955, Free PMC Article
    4. Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis. Zhou X, et al. Plant J, 2009 Oct. PMID 19500300
    5. Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation. Nelissen H, et al. Proc Natl Acad Sci U S A, 2010 Jan 26. PMID 20080602, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis Elongator post-transcriptionally modulates PIN protein levels.
      Title: Meta-regulation of Arabidopsis auxin responses depends on tRNA maturation.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_117077.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within auxin polar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of anthocyanin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of elongator holoenzyme complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    elongator protein 6
    NP_567351.1
    • elongator protein 6 (ELP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2348 (InterPro:IPR018627); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6305320..6307552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117077.4 → NP_567351.1  elongator protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567351.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z343, Q8L9Y2, Q9SN32
      UniProtKB/TrEMBL
      A0A178V2M9, A0A5S9XSP7, A0A654FMY2, A0A7G2EYM8
      Conserved Domains (1) summary
      cd19495
      Location:27 → 258
      Elp6; Elongator subcomplex subunit Elp6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9Y2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools