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    SNF7.1 SNF7 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829037, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SNF7.1
    Official Full Name
    SNF7 family protein
    Primary source
    TAIR:AT4G29160
    Locus tag
    AT4G29160
    See related
    Araport:AT4G29160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19B15.190; F19B15_190; VPS32
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    Genomic context

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    See SNF7.1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (14380660..14382736)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene IQ-domain 25 Neighboring gene Mnd1 family protein Neighboring gene root hair specific 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Endosomal Sorting Complex Required for Transport III Regulates Internal Vesicle Formation of the Prevacuolar Compartment and Is Required for Plant Development. Cai Y, et al. Plant Physiol, 2014 Jul. PMID 24812106, Free PMC Article
    2. The AAA-type ATPase AtSKD1 contributes to vacuolar maintenance of Arabidopsis thaliana. Shahriari M, et al. Plant J, 2010 Oct. PMID 20663085
    3. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
    4. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
    5. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084999.2
    NM_119060.5
    NM_202906.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within intralumenal vesicle formation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    SNF7 family protein
    NP_001078468.1
    • SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847 Blast hits to 1847 proteins in 245 species: Archae - 2; Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
    NP_194645.1
    • SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847 Blast hits to 1847 proteins in 245 species: Archae - 2; Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
    NP_974635.1
    • SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT2G19830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14380660..14382736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119060.5 → NP_194645.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194645.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E9U7, Q8L9C3, Q9SZE4
      UniProtKB/TrEMBL
      A0A178V100, A0A654FU36
      Conserved Domains (1) summary
      pfam03357
      Location:17 → 160
      Snf7

    2. NM_001084999.2 → NP_001078468.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078468.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E9U7, Q8L9C3, Q9SZE4
      UniProtKB/TrEMBL
      A0A178V100, A0A654FU36
      Conserved Domains (1) summary
      pfam03357
      Location:17 → 160
      Snf7

    3. NM_202906.1 → NP_974635.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974635.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FU36
      Conserved Domains (1) summary
      pfam03357
      Location:16 → 133
      Snf7; Snf7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZE4.1

    Gene LinkOut

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