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    keratin-associated protein (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829241, updated on 18-Sep-2024

    Summary

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    Official Full Name
    keratin-associated protein (DUF1218)
    Primary source
    TAIR:AT4G31130
    Locus tag
    AT4G31130
    See related
    Araport:AT4G31130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6E21.50; F6E21_50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (15136909..15138871, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Wall-associated kinase family protein Neighboring gene DUF1997 family protein, putative (DUF1997) Neighboring gene SHK1 binding protein 1 Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene endonuclease V family protein Neighboring gene DDB1-CUL4 associated factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119263.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    keratin-associated protein (DUF1218)
    NP_194842.1
    • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15136909..15138871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119263.5 → NP_194842.1  keratin-associated protein (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2H8, Q9M089
      Conserved Domains (1) summary
      pfam06749
      Location:59 → 155
      DUF1218; Protein of unknown function (DUF1218)
    Nucleotide Protein
    Heading Accession and Version

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