CCoAOMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: CCoAOMT1
Official Full Name: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Primary source: TAIR:AT4G34050
Locus tag: AT4G34050
See related: Araport:AT4G34050
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: caffeoyl coenzyme A O-methyltransferase 1; F28A23.190; F28A23_190
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Genomic context

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See CCoAOMT1 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (16310409..16312308)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

CCOAOMT1, a candidate cargo secreted via VAMP721/722 secretory vesicles in Arabidopsis.
Title: CCOAOMT1, a candidate cargo secreted via VAMP721/722 secretory vesicles in Arabidopsis.
CCoAOMT1 besides its role in vascular tissues can be localized to the tapetum of young stamens, contributing to the biosynthesis of spermidine phenylpropanoid conjugates in Arabidopsis. [CCoAOMT1]
Title: The role of CCoAOMT1 and COMT1 in Arabidopsis anthers.
A single amino acid determines position specificity of an Arabidopsis thaliana CCoAOMT-like O-methyltransferase.
Title: A single amino acid determines position specificity of an Arabidopsis thaliana CCoAOMT-like O-methyltransferase.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_119566.5

Supported by ESTs:

NM_179160.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables O-methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables caffeoyl-CoA O-methyltransferase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within coumarin biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within lignin biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasmic stress granule	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in cytosol	TAS Traceable Author Statement more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasma membrane	HDA more info	PubMed

General protein information

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Preferred Names: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

NP_195131.1

caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).

NP_849491.1

caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 3628 Blast hits to 3614 proteins in 1109 species: Archae - 11; Bacteria - 2045; Metazoa - 117; Fungi - 47; Plants - 463; Viruses - 0; Other Eukaryotes - 945 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

16310409..16312308

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001342249.1 → NP_001328048.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B3H0
NM_119566.5 → NP_195131.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195131.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O49499, Q8L989

UniProtKB/TrEMBL

A0A178V7A4, A0A5S9XYU5

Conserved Domains (1) summary

PLN02589
Location:15 → 259

PLN02589; caffeoyl-CoA O-methyltransferase
NM_179160.1 → NP_849491.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_849491.1

Status: REVIEWED

UniProtKB/TrEMBL

Q3E6Z1

Conserved Domains (1) summary

cl17173
Location:30 → 148

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...