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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830005, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT4G38490
    Locus tag
    AT4G38490
    See related
    Araport:AT4G38490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20M13.50; F20M13_50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (18006288..18007372)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ACT-like protein tyrosine kinase family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene chromatin-remodeling complex subunit Neighboring gene Sept9 (DUF616) Neighboring gene ATPase, V1 complex, subunit B protein Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Sec2 translocase of the chloroplast inner envelope contains a unique and dedicated SECE2 component. Li Y, et al. Plant J, 2015 Nov. PMID 26406904
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that SECE2 plays an essential role in plant growth and development, and specifically interacts with the SCY2 component in vivo.
      Title: The Sec2 translocase of the chloroplast inner envelope contains a unique and dedicated SECE2 component.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120010.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein targeting IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_568043.1
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18006288..18007372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120010.3 → NP_568043.1  uncharacterized protein AT4G38490 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568043.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYU5, A0A5S9Y0M8, Q940H5
    Nucleotide Protein
    Heading Accession and Version

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