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    sks9 SKU5 similar 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829999, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sks9
    Official Full Name
    SKU5 similar 9
    Primary source
    TAIR:AT4G38420
    Locus tag
    AT4G38420
    See related
    Araport:AT4G38420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22I13.190; F22I13_190; SKU5 similar 9
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    Genomic context

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    See sks9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (17982616..17985384)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Dehydrin family protein Neighboring gene rho guanyl-nucleotide exchange factor 1 Neighboring gene RPAP1-like, carboxy-terminal protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342496.1
    NM_001342497.1
    NM_120004.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    SKU5 similar 9
    NP_195555.2
    • SKU5 similar 9 (sks9); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 10 (TAIR:AT4G28090.1); Has 5024 Blast hits to 4968 proteins in 899 species: Archae - 4; Bacteria - 1507; Metazoa - 261; Fungi - 1826; Plants - 1281; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17982616..17985384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120004.5 → NP_195555.2  SKU5 similar 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195555.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYB7, A0A5S9Y072, Q8VYB3
      Conserved Domains (1) summary
      PLN02792
      Location:13 → 548
      PLN02792; oxidoreductase

    2. NM_001342496.1 → NP_001329209.1  SKU5 similar 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B703, A0A5S9Y072
      Conserved Domains (1) summary
      PLN02792
      Location:13 → 454
      PLN02792; oxidoreductase

    3. NM_001342497.1 → NP_001329210.1  SKU5 similar 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B710, A0A5S9Y072
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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