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    RING/U-box protein with C6HC-type zinc finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823688, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box protein with C6HC-type zinc finger
    Primary source
    TAIR:AT3G45480
    Locus tag
    AT3G45480
    See related
    Araport:AT3G45480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (16683204..16684592, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene IBR domain containing protein Neighboring gene IBR domain containing protein Neighboring gene reverse transcriptase-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114417.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box protein with C6HC-type zinc finger
    NP_190134.2
    • RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: IBR domain containing protein (TAIR:AT3G45460.1); Has 2300 Blast hits to 2269 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 395; Plants - 659; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16683204..16684592 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114417.2 → NP_190134.2  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190134.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J5L3, Q1PEI0
      Conserved Domains (2) summary
      smart00647
      Location:224 → 291
      IBR; In Between Ring fingers
      cl14782
      Location:59 → 139
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    Nucleotide Protein
    Heading Accession and Version

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