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    NUDT9 nudix hydrolase homolog 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823765, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NUDT9
    Official Full Name
    nudix hydrolase homolog 9
    Primary source
    TAIR:AT3G46200
    Locus tag
    AT3G46200
    See related
    Araport:AT3G46200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    aTNUDT9; nudix hydrolase homolog 9
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    Genomic context

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    See NUDT9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (16968423..16971321)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene TRAF-like family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of Arabidopsis AtNUDX9 as a GDP-d-mannose pyrophosphohydrolase: its involvement in root growth inhibition in response to ammonium. Tanaka H, et al. J Exp Bot, 2015 Sep. PMID 26049160, Free PMC Article
    2. Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana. Ogawa T, et al. J Biol Chem, 2005 Jul 1. PMID 15878881
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtNUDX9 is involved in the regulation of GDP-d-mannose levels affecting ammonium sensitivity via modulation of protein N-glycosylation in the roots.
      Title: Identification and characterization of Arabidopsis AtNUDX9 as a GDP-d-mannose pyrophosphohydrolase: its involvement in root growth inhibition in response to ammonium.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001339240.1
    NM_001339241.1
    NM_114489.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GDP-mannose hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to ammonium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nudix hydrolase homolog 9
    NP_190206.2
    • nudix hydrolase homolog 9 (NUDT9); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); Has 111 Blast hits to 111 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16968423..16971321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339237.1 → NP_001327061.1  nudix hydrolase homolog 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VL90, A0A1I9LR56

    2. NM_001339238.1 → NP_001327062.1  nudix hydrolase homolog 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR57

    3. NM_001339239.1 → NP_001327064.1  nudix hydrolase homolog 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKK5, A0A1I9LR59

    4. NM_114489.5 → NP_190206.2  nudix hydrolase homolog 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190206.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXK4, Q8VYR2, Q9LX75
      UniProtKB/TrEMBL
      A0A178VKK5, A0A654FE64
      Conserved Domains (1) summary
      cd02883
      Location:134 → 275
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    5. NM_001339240.1 → NP_001327065.1  nudix hydrolase homolog 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VL90, A0A1I9LR60

    6. NM_001339241.1 → NP_001327063.1  nudix hydrolase homolog 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VL90, A0A1I9LR58
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYR2.1

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