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    Ribosomal protein S10p/S20e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823891, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S10p/S20e family protein
    Primary source
    TAIR:AT3G47370
    Locus tag
    AT3G47370
    See related
    Araport:AT3G47370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (17453423..17454730, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hydroxysteroid dehydrogenase 2 Neighboring gene hydroxysteroid dehydrogenase 3 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene ncRNA Neighboring gene cytidine/deoxycytidylate deaminase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035749.3
    NM_114605.3
    NM_180334.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S10p/S20e family protein
    NP_001030826.1
    • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_190321.1
    • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7480 Blast hits to 7480 proteins in 2601 species: Archae - 270; Bacteria - 4741; Metazoa - 380; Fungi - 140; Plants - 182; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).
    NP_850665.1
    • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7480 Blast hits to 7480 proteins in 2601 species: Archae - 270; Bacteria - 4741; Metazoa - 380; Fungi - 140; Plants - 182; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17453423..17454730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114605.3 → NP_190321.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190321.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STY6
      UniProtKB/TrEMBL
      A0A178VBU3, A0A5S9XJE6, Q8H189
      Conserved Domains (1) summary
      cl00314
      Location:4 → 119
      Ribosomal_S10; Ribosomal protein S10p/S20e

    2. NM_180334.2 → NP_850665.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850665.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STY6
      UniProtKB/TrEMBL
      A0A178VBU3, A0A5S9XJE6, Q8H189
      Conserved Domains (1) summary
      cl00314
      Location:4 → 119
      Ribosomal_S10; Ribosomal protein S10p/S20e

    3. NM_001035749.3 → NP_001030826.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030826.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STY6
      UniProtKB/TrEMBL
      A0A178VBU3, A0A5S9XJE6, Q8H189
      Conserved Domains (1) summary
      cl00314
      Location:4 → 119
      Ribosomal_S10; Ribosomal protein S10p/S20e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STY6.1

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