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    SWIB complex BAF60b domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824020, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB complex BAF60b domain-containing protein
    Primary source
    TAIR:AT3G48600
    Locus tag
    AT3G48600
    See related
    Araport:AT3G48600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18010026..18011440, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 11 Neighboring gene nuclear factor Y, subunit C1 Neighboring gene non-specific phospholipase C6 Neighboring gene Outer membrane OMP85 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114719.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIB complex BAF60b domain-containing protein
    NP_001190034.1
    • SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1).
    NP_190429.2
    • SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 322 Blast hits to 306 proteins in 73 species: Archae - 0; Bacteria - 9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18010026..18011440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203105.2 → NP_001190034.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190034.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFY1, F4JF32
      Conserved Domains (1) summary
      pfam02201
      Location:37 → 111
      SWIB; SWIB/MDM2 domain

    2. NM_114719.3 → NP_190429.2  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190429.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJ44, F4JF33
      Conserved Domains (2) summary
      pfam02201
      Location:37 → 111
      SWIB; SWIB/MDM2 domain
      cl02489
      Location:137 → 174
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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