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    DHHC-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824860, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DHHC-type zinc finger family protein
    Primary source
    TAIR:AT3G56930
    Locus tag
    AT3G56930
    See related
    Araport:AT3G56930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8M16.5
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21073330..21076315)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene plastid-specific 50S ribosomal protein 5 Neighboring gene DHHC-type zinc finger family protein Neighboring gene ncRNA Neighboring gene dicarboxylate diiron protein, putative (Crd1) Neighboring gene small and basic intrinsic protein 2;1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PROTEIN S-ACYL TRANSFERASE4 mediates root hair growth. Wan ZY, et al. Plant J, 2017 Apr. PMID 28107768
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203182.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein-cysteine S-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within root hair elongation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in root hair IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in trans-Golgi network transport vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DHHC-type zinc finger family protein
    NP_001190111.1
    • DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1).
    NP_191252.1
    • DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1); Has 5165 Blast hits to 5156 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2209; Fungi - 768; Plants - 846; Viruses - 2; Other Eukaryotes - 1340 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21073330..21076315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115552.4 → NP_191252.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191252.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L5Y7, Q9M1K5
      UniProtKB/TrEMBL
      A0A5S9XN82, A0A7G2EYF0
      Conserved Domains (1) summary
      pfam01529
      Location:146 → 271
      DHHC; DHHC palmitoyltransferase

    2. NM_001203182.1 → NP_001190111.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190111.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FGH3, A0A7G2EYF0, F4J0U7
      Conserved Domains (1) summary
      pfam01529
      Location:146 → 235
      DHHC; DHHC palmitoyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1K5.1

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