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    2-oxoglutarate-dependent dioxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831672, updated on 18-Sep-2024

    Summary

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    Official Full Name
    2-oxoglutarate-dependent dioxygenase family protein
    Primary source
    TAIR:AT5G01780
    Locus tag
    AT5G01780
    See related
    Araport:AT5G01780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20L15.50; T20L15_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (302098..304279, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LURP-one-like protein (DUF567) Neighboring gene ENTH/VHS/GAT family protein Neighboring gene regulatory-associated protein of TOR 2 (RAPTOR2) Neighboring gene uncharacterized protein Neighboring gene saposin B domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of AtALKBH1A and AtALKBH1D as DNA N(6)-adenine demethylases in Arabidopsis thaliana. Li D, et al. Plant Sci, 2024 May. PMID 38432357
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203273.2
    NM_001342621.1
    NM_001342622.1
    NM_001342623.1
    NM_120256.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA demethylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within seed germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    2-oxoglutarate-dependent dioxygenase family protein
    NP_001190202.1
    • 2-oxoglutarate-dependent dioxygenase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1).
    NP_195798.2
    • 2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      302098..304279 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203273.2 → NP_001190202.1  2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190202.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z2F3, F4KAV2, Q8GWJ2, Q9LZW8
      UniProtKB/TrEMBL
      A0A654FXN3
      Conserved Domains (1) summary
      pfam13532
      Location:225 → 440
      2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

    2. NM_001342623.1 → NP_001332591.1  2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHF6

    3. NM_001342622.1 → NP_001332590.1  2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHF5

    4. NM_001342621.1 → NP_001332589.1  2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHF5

    5. NM_120256.2 → NP_195798.2  2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195798.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXN3, F4KAV1
      Conserved Domains (1) summary
      pfam13532
      Location:170 → 385
      2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

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