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    SK13 shaggy-like kinase 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831316, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK13
    Official Full Name
    shaggy-like kinase 13
    Primary source
    TAIR:AT5G14640
    Locus tag
    AT5G14640
    See related
    Araport:AT5G14640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSK13; shaggy-like kinase 13; SHAGGY-LIKE KINASE 13; T15N1.130; T15N1_130
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    Genomic context

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    See SK13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (4718994..4722371, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DEAD box RNA helicase family protein Neighboring gene domains rearranged methyltransferase 2 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiling of the whole Arabidopsis shaggy-like kinase multigene family by real-time reverse transcriptase-polymerase chain reaction. Charrier B, et al. Plant Physiol, 2002 Oct. PMID 12376626, Free PMC Article
    2. Plant GSK3 proteins regulate xylem cell differentiation downstream of TDIF-TDR signalling. Kondo Y, et al. Nat Commun, 2014 Mar 24. PMID 24662460
    3. The F-box Protein KIB1 Mediates Brassinosteroid-Induced Inactivation and Degradation of GSK3-like Kinases in Arabidopsis. Zhu JY, et al. Mol Cell, 2017 Jun 1. PMID 28575660, Free PMC Article
    4. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343350.1
    NM_121468.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within hyperosmotic response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    acts_upstream_of_or_within response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    shaggy-like kinase 13
    NP_196968.2
    • shaggy-like kinase 13 (SK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-related kinase 11 (TAIR:AT5G26751.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4718994..4722371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121468.4 → NP_196968.2  shaggy-like kinase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196968.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZD5, Q9LYJ6
      UniProtKB/TrEMBL
      A0A178UDT1
      Conserved Domains (2) summary
      smart00220
      Location:74 → 358
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14137
      Location:69 → 361
      STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3

    2. NM_001343350.1 → NP_001329975.1  shaggy-like kinase 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZD5, Q9LYJ6
      UniProtKB/TrEMBL
      A0A178UDT1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZD5.1

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