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    Vps51/Vps67 family (components of vesicular transport) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831491, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vps51/Vps67 family (components of vesicular transport) protein
    Primary source
    TAIR:AT5G16300
    Locus tag
    AT5G16300
    See related
    Araport:AT5G16300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQK4.2; MQK4_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (5337895..5342432)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene VALINE-TOLERANT 1 Neighboring gene Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 Neighboring gene ncRNA Neighboring gene FRIGIDA like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis COG Complex Subunits COG3 and COG8 Modulate Golgi Morphology, Vesicle Trafficking Homeostasis and Are Essential for Pollen Tube Growth. Tan X, et al. PLoS Genet, 2016 Jul. PMID 27448097, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036813.2
    NM_001203391.1
    NM_203059.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Vps51/Vps67 family (components of vesicular transport) protein
    NP_001031890.1
    • Vps51/Vps67 family (components of vesicular transport) protein; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 284 Blast hits to 262 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 62; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    NP_001190320.1
    • Vps51/Vps67 family (components of vesicular transport) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812).
    NP_197134.1
    • Vps51/Vps67 family (components of vesicular transport) protein; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974788.1
    • Vps51/Vps67 family (components of vesicular transport) protein; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5337895..5342432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121635.4 → NP_197134.1  Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197134.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFF3
      UniProtKB/TrEMBL
      A0A178UBP5
      Conserved Domains (1) summary
      pfam08700
      Location:23 → 102
      Vps51; Vps51/Vps67

    2. NM_001203391.1 → NP_001190320.1  Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190320.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBP5, F4KCR8
      Conserved Domains (1) summary
      pfam08700
      Location:21 → 100
      Vps51; Vps51/Vps67

    3. NM_203059.2 → NP_974788.1  Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974788.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBP5, F4KCR6
      Conserved Domains (1) summary
      pfam08700
      Location:23 → 102
      Vps51; Vps51/Vps67

    4. NM_001036813.2 → NP_001031890.1  Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031890.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBP5, F4KCR7
      Conserved Domains (1) summary
      pfam08700
      Location:23 → 102
      Vps51; Vps51/Vps67
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFF3.1

    Gene LinkOut

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