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    FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834467, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FAD-binding Berberine family protein
    Primary source
    TAIR:AT5G44410
    Locus tag
    AT5G44410
    See related
    Araport:AT5G44410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFC16.3; MFC16_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (17891132..17893067, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. Irshad M, et al. BMC Plant Biol, 2008 Sep 16. PMID 18796151, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123808.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAD-binding Berberine family protein
    NP_199254.1
    • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44440.1); Has 5072 Blast hits to 4970 proteins in 757 species: Archae - 49; Bacteria - 2261; Metazoa - 10; Fungi - 1748; Plants - 688; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17891132..17893067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123808.4 → NP_199254.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199254.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WTH3, Q9FI25
      UniProtKB/TrEMBL
      A0A5S9YAW5
      Conserved Domains (3) summary
      COG0277
      Location:82 → 516
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:85 → 220
      FAD_binding_4; FAD binding domain
      pfam08031
      Location:468 → 527
      BBE; Berberine and berberine like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FI25.1

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