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    DSS1(V) DSS1 homolog on chromosome V [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834532, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DSS1(V)
    Official Full Name
    DSS1 homolog on chromosome V
    Primary source
    TAIR:AT5G45010
    Locus tag
    AT5G45010
    See related
    Araport:AT5G45010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDSS1(V); DSS1 homolog on chromosome V; K21C13.20; K21C13_20
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    Genomic context

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    See DSS1(V) in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (18166898..18168383, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene Glutathione S-transferase family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Glutathione S-transferase family protein Neighboring gene ncRNA Neighboring gene Trypsin family protein Neighboring gene Cytochrome c Neighboring gene Disease resistance protein (TIR-NBS-LRR class)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CRISPR/Cas9-Targeted Disruption of Two Highly Homologous Arabidopsis thaliana DSS1 Genes with Roles in Development and the Oxidative Stress Response. Nikolić I, et al. Int J Mol Sci, 2023 Jan 26. PMID 36768765, Free PMC Article
    2. Intrinsically disordered protein AtDSS1(V) participates in plant defense response to oxidative stress. Nikolić IP, et al. Protoplasma, 2021 Jul. PMID 33404921
    3. Interaction between Arabidopsis Brca2 and its partners Rad51, Dmc1, and Dss1. Dray E, et al. Plant Physiol, 2006 Mar. PMID 16415210, Free PMC Article
    4. Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Lu Q, et al. Plant J, 2010 Jan. PMID 19843313
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CRISPR/Cas9-Targeted Disruption of Two Highly Homologous Arabidopsis thaliana DSS1 Genes with Roles in Development and the Oxidative Stress Response.
      Title: CRISPR/Cas9-Targeted Disruption of Two Highly Homologous Arabidopsis thaliana DSS1 Genes with Roles in Development and the Oxidative Stress Response.
    2. Data identified ATDSS1 as a component of nuclear pore complexes.
      Title: Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_123869.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in proteasome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to hydrogen peroxide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of proteasome regulatory particle, lid subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DSS1 homolog on chromosome V
    NP_199314.1
    • DSS1 homolog on chromosome V (DSS1(V)); CONTAINS InterPro DOMAIN/s: DSS1/SEM1 (InterPro:IPR007834); BEST Arabidopsis thaliana protein match is: deletion of SUV3 suppressor 1(I) (TAIR:AT1G64750.2); Has 302 Blast hits to 302 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 75; Plants - 68; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18166898..18168383 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123869.4 → NP_199314.1  DSS1 homolog on chromosome V [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199314.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LD17, Q9FL96
      UniProtKB/TrEMBL
      A0A178USB4, A0A384KQL4, Q2PDG4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FL96.1

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