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    SPOC domain / Transcription elongation factor S-II protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832627, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SPOC domain / Transcription elongation factor S-II protein
    Primary source
    TAIR:AT5G25520
    Locus tag
    AT5G25520
    See related
    Araport:AT5G25520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T14C9.60; T14C9_60
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (8885088..8889904)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene exosome complex exonuclease Neighboring gene ncRNA Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein Neighboring gene CTC-interacting domain 6 Neighboring gene Leucine-rich repeat (LRR) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BORDER proteins protect expression of neighboring genes by promoting 3' Pol II pausing in plants. Yu X, et al. Nat Commun, 2019 Sep 25. PMID 31554790, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343934.1
    NM_001343935.1
    NM_122463.3
    NM_203104.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SPOC domain / Transcription elongation factor S-II protein
    NP_197934.2
    • SPOC domain / Transcription elongation factor S-II protein; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 2128 Blast hits to 1752 proteins in 300 species: Archae - 0; Bacteria - 197; Metazoa - 863; Fungi - 365; Plants - 186; Viruses - 5; Other Eukaryotes - 512 (source: NCBI BLink).
    NP_974833.1
    • SPOC domain / Transcription elongation factor S-II protein; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8885088..8889904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343931.1 → NP_001331210.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHQ5, A0A1P8BD85, A0A384LKH0, A0A7G2FF17

    2. NM_001343932.1 → NP_001331213.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FF17, Q8GYX6
      Conserved Domains (2) summary
      pfam07500
      Location:350 → 442
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:651 → 721
      SPOC; SPOC domain

    3. NM_001343933.1 → NP_001331214.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FF17, Q8GYX6
      Conserved Domains (2) summary
      pfam07500
      Location:350 → 442
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:651 → 721
      SPOC; SPOC domain

    4. NM_122463.3 → NP_197934.2  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197934.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FF17, Q8GYX6
      Conserved Domains (2) summary
      pfam07500
      Location:350 → 442
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:651 → 721
      SPOC; SPOC domain

    5. NM_001343934.1 → NP_001331211.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD97, A0A654G4M3

    6. NM_203104.2 → NP_974833.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974833.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G4M3, F4JWU1
      Conserved Domains (2) summary
      pfam07500
      Location:358 → 438
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:656 → 762
      SPOC; SPOC domain

    7. NM_001343935.1 → NP_001331212.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FF17, Q8GYX6
      Conserved Domains (2) summary
      pfam07500
      Location:350 → 442
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:651 → 721
      SPOC; SPOC domain
    Nucleotide Protein
    Heading Accession and Version

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