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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831435, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT5G15790
    Locus tag
    AT5G15790
    See related
    Araport:AT5G15790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14F8.170; F14F8_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (5148722..5151433)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein PSRP-3/Ycf65 Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene glucose-6-phosphate acetyltransferase 1 Neighboring gene ncRNA Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene ncRNA Neighboring gene chaperone

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343423.1
    NM_001343424.1
    NM_121584.4
    NM_203056.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_197083.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 5281 Blast hits to 5274 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 1803; Fungi - 302; Plants - 2328; Viruses - 9; Other Eukaryotes - 839 (source: NCBI BLink).
    NP_974785.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5148722..5151433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343422.1 → NP_001331487.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE64, A0A5S9Y4G4, Q9LFU7

    2. NM_203056.3 → NP_974785.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE64, A0A5S9Y4G4, Q9LFU7
      Conserved Domains (2) summary
      pfam12678
      Location:178 → 222
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:180 → 222
      zf-RING_2; Ring finger domain

    3. NM_001343423.1 → NP_001331488.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCB9, A0A1P8BE16

    4. NM_121584.4 → NP_197083.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197083.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE64, A0A5S9Y4G4, Q9LFU7
      Conserved Domains (2) summary
      pfam12678
      Location:178 → 222
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:180 → 222
      zf-RING_2; Ring finger domain

    5. NM_001343424.1 → NP_001331489.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE64, A0A5S9Y4G4, Q9LFU7
    Nucleotide Protein
    Heading Accession and Version

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