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    Metal-dependent phosphohydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839157, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Metal-dependent phosphohydrolase
    Primary source
    TAIR:AT1G26160
    Locus tag
    AT1G26160
    See related
    Araport:AT1G26160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28B23.16; F28B23_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (9044422..9047049, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein Neighboring gene uncharacterized protein Neighboring gene proline-rich extensin-like receptor kinase 10 Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene Phosphoribulokinase / Uridine kinase family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332689.1
    NM_102381.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 5'-deoxynucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Metal-dependent phosphohydrolase
    NP_564240.1
    • Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: Metal-dependent phosphohydrolase (TAIR:AT2G23820.2); Has 1552 Blast hits to 1531 proteins in 690 species: Archae - 126; Bacteria - 959; Metazoa - 120; Fungi - 153; Plants - 73; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9044422..9047049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102381.3 → NP_564240.1  Metal-dependent phosphohydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564240.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WK68, A0A5S9VYD3, Q93ZV1
      Conserved Domains (1) summary
      pfam13023
      Location:84 → 239
      HD_3; HD domain

    2. NM_001332689.1 → NP_001320747.1  Metal-dependent phosphohydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANS1
    Nucleotide Protein
    Heading Accession and Version

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