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    CRU3 cruciferin 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828970, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CRU3
    Official Full Name
    cruciferin 3
    Primary source
    TAIR:AT4G28520
    Locus tag
    AT4G28520
    See related
    Araport:AT4G28520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CRC; cruciferin 3; CRUCIFERIN C; F20O9.210; F20O9_210
    Summary
    Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
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    Genomic context

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    See CRU3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (14087556..14089796)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 73 Neighboring gene prohibitin 1 Neighboring gene NAC domain containing protein 74 Neighboring gene casein kinase I-like 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteoform of Arabidopsis seed storage protein identified by functional proteomics approach exhibits acyl hydrolase activity during germination. Latha M, et al. Int J Biol Macromol, 2021 Mar 1. PMID 33454325
    2. Two naturally occurring deletion mutants of 12S seed storage proteins in Arabidopsis thaliana. Hou A, et al. Planta, 2005 Oct. PMID 15912356
    3. Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteases. Gruis DF, et al. Plant Cell, 2002 Nov. PMID 12417707, Free PMC Article
    4. Identification of Interactions between Abscisic Acid and Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase. Galka MM, et al. PLoS One, 2015. PMID 26197050, Free PMC Article
    5. Protein tyrosine kinases and protein tyrosine phosphatases are involved in abscisic acid-dependent processes in Arabidopsis seeds and suspension cells. Ghelis T, et al. Plant Physiol, 2008 Nov. PMID 18768909, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Proteoform of Arabidopsis seed storage protein identified by functional proteomics approach exhibits acyl hydrolase activity during germination.
      Title: Proteoform of Arabidopsis seed storage protein identified by functional proteomics approach exhibits acyl hydrolase activity during germination.
    2. The isolation and characterization of deletion mutations of the alpha-subunits of cruciferin B and cruciferin C in A. thaliana are reported.
      Title: Two naturally occurring deletion mutants of 12S seed storage proteins in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084990.1
    NM_001341920.1
    NM_118994.4
    NM_179133.2
    NM_179134.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nutrient reservoir activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nutrient reservoir activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to abscisic acid stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy TAS
    Traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in seed maturation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosperm protein body TAS
    Traceable Author Statement
    more info
    		  

    General protein information

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    Preferred Names
    cruciferin 3
    NP_001078459.1
    • cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6292 Blast hits to 2835 proteins in 438 species: Archae - 6; Bacteria - 845; Metazoa - 715; Fungi - 295; Plants - 2066; Viruses - 10; Other Eukaryotes - 2355 (source: NCBI BLink).
    NP_194581.1
    • cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6518 Blast hits to 3043 proteins in 462 species: Archae - 6; Bacteria - 857; Metazoa - 718; Fungi - 277; Plants - 2299; Viruses - 10; Other Eukaryotes - 2351 (source: NCBI BLink).
    NP_849464.1
    • cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6262 Blast hits to 2814 proteins in 435 species: Archae - 6; Bacteria - 837; Metazoa - 721; Fungi - 291; Plants - 2048; Viruses - 10; Other Eukaryotes - 2349 (source: NCBI BLink).
    NP_849465.1
    • cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.2); Has 7338 Blast hits to 2904 proteins in 458 species: Archae - 6; Bacteria - 840; Metazoa - 691; Fungi - 272; Plants - 3081; Viruses - 10; Other Eukaryotes - 2438 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14087556..14089796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118994.4 → NP_194581.1  cruciferin 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194581.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MRV6, C0Z2B9, Q41905, Q41913, Q42181, Q56YY3, Q8RX74, Q96318
      UniProtKB/TrEMBL
      A0A178V3Z1, A0A5S9XWS1, A0A654FTR8
      Conserved Domains (1) summary
      cl40423
      Location:1 → 516
      cupin_RmlC-like; RmlC-like cupin superfamily

    2. NM_179133.2 → NP_849464.1  cruciferin 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849464.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96318
      Conserved Domains (2) summary
      pfam00190
      Location:44 → 285
      Cupin_1; Cupin
      cl21464
      Location:346 → 388
      cupin_like; Conserved domain found in cupin and related proteins

    3. NM_001084990.1 → NP_001078459.1  cruciferin 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078459.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96318
      Conserved Domains (2) summary
      pfam00190
      Location:44 → 285
      Cupin_1; Cupin
      cl21464
      Location:346 → 388
      cupin_like; Conserved domain found in cupin and related proteins

    4. NM_179134.1 → NP_849465.1  cruciferin 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849465.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3Z1, F4JLA9
      Conserved Domains (2) summary
      PLN00212
      Location:1 → 445
      PLN00212; glutelin; Provisional
      pfam00190
      Location:284 → 424
      Cupin_1; Cupin

    5. NM_001341920.1 → NP_001328588.1  cruciferin 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B543
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96318.1

    Gene LinkOut

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