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    MYB48 myb domain protein 48 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823756, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB48
    Official Full Name
    myb domain protein 48
    Primary source
    TAIR:AT3G46130
    Locus tag
    AT3G46130
    See related
    Araport:AT3G46130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB48; ATMYB48-1; ATMYB48-2; ATMYB48-3; myb domain protein 111; myb domain protein 48; MYB111; PFG3; PRODUCTION OF FLAVONOL GLYCOSIDES 3
    Summary
    Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.
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    Genomic context

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    See MYB48 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (16945230..16946699)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 19 Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. Li J, et al. J Exp Bot, 2006. PMID 16531467
    2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084780.1
    NM_001203089.1
    NM_114482.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 48
    NP_001030816.1
    • ATMYB48-1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 59 (TAIR:AT5G59780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078249.1
    • ATMYB48-2; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 59 (TAIR:AT5G59780.3); Has 8057 Blast hits to 7621 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 528; Fungi - 246; Plants - 5762; Viruses - 3; Other Eukaryotes - 1518 (source: NCBI BLink).
    NP_001190018.1
    • myb domain protein 48 (MYB48); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), MYB-like (InterPro:IPR017877), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 59 (TAIR:AT5G59780.2).
    NP_190199.2
    • myb domain protein 48 (MYB48); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 59 (TAIR:AT5G59780.3); Has 8993 Blast hits to 8283 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 750; Fungi - 483; Plants - 5952; Viruses - 3; Other Eukaryotes - 1805 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16945230..16946699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035739.2 → NP_001030816.1  myb domain protein 48 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030816.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V991
      Conserved Domains (1) summary
      PLN03091
      Location:4 → 50
      PLN03091; hypothetical protein; Provisional

    2. NM_114482.2 → NP_190199.2  myb domain protein 48 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4JL82, Q67YJ3, Q9LX82
      UniProtKB/TrEMBL
      A0A2H1ZEJ2, A0A654FD81, A0A7G2EP33
      Conserved Domains (1) summary
      PLN03212
      Location:8 → 112
      PLN03212; Transcription repressor MYB5; Provisional

    3. NM_001084780.1 → NP_001078249.1  myb domain protein 48 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078249.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4JL82, Q67YJ3, Q9LX82
      UniProtKB/TrEMBL
      A0A7G2EP33
      Conserved Domains (2) summary
      smart00717
      Location:32 → 79
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:32 → 77
      Myb_DNA-binding; Myb-like DNA-binding domain

    4. NM_001203089.1 → NP_001190018.1  myb domain protein 48 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190018.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4JL82, Q67YJ3, Q9LX82
      UniProtKB/TrEMBL
      A0A7G2EP33, F4J7Y0
      Conserved Domains (2) summary
      smart00717
      Location:42 → 89
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:42 → 87
      Myb_DNA-binding; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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