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    late embryogenesis abundant domain-containing protein / LEA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816349, updated on 18-Sep-2024

    Summary

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    Official Full Name
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    Primary source
    TAIR:AT2G18340
    Locus tag
    AT2G18340
    See related
    Araport:AT2G18340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30D6.15; T30D6_15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (7969298..7971114)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene RAD-like 4 Neighboring gene homeobox protein 24 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LEA13 and LEA30 Are Involved in Tolerance to Water Stress and Stomata Density in Arabidopsis thaliana. López-Cordova A, et al. Plants (Basel), 2021 Aug 18. PMID 34451739, Free PMC Article
    2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    3. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202620.1
    NM_001335592.1
    NM_127391.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    NP_001189549.1
    • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: petal, leaf whorl, sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein (TAIR:AT4G36600.1).
    NP_179425.1
    • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein (TAIR:AT4G36600.1); Has 8432 Blast hits to 2711 proteins in 785 species: Archae - 21; Bacteria - 3659; Metazoa - 711; Fungi - 355; Plants - 2545; Viruses - 35; Other Eukaryotes - 1106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7969298..7971114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127391.3 → NP_179425.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179425.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9ZPW6
      Conserved Domains (1) summary
      pfam02987
      Location:132 → 175
      LEA_4; Late embryogenesis abundant protein

    2. NM_001335592.1 → NP_001323621.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXM0

    3. NM_001202620.1 → NP_001189549.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189549.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IQI5
      Conserved Domains (1) summary
      pfam02987
      Location:93 → 136
      LEA_4; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version

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