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    Helicase protein with RING/U-box domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839319, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Helicase protein with RING/U-box domain-containing protein
    Primary source
    TAIR:AT1G05120
    Locus tag
    AT1G05120
    See related
    Araport:AT1G05120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (1471323..1476289, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene mitogen-activated protein kinase kinase kinase 18 Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RAD16 Homologues Are Involved in UV Tolerance and Growth. Alrayes L, et al. Genes (Basel), 2023 Jul 28. PMID 37628604, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001331520.1
    NM_100390.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in global genome nucleotide-excision repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleotide-excision repair complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Helicase protein with RING/U-box domain-containing protein
    NP_172004.1
    • Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1471323..1476289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100390.4 → NP_172004.1  Helicase protein with RING/U-box domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172004.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5J4, A0A654E7Y6, F4I795
      Conserved Domains (3) summary
      COG0553
      Location:78 → 831
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:139 → 482
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
      cl17238
      Location:594 → 618
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001331520.1 → NP_001323244.1  Helicase protein with RING/U-box domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWF9, A0A654E7Y6
      Conserved Domains (3) summary
      COG0553
      Location:121 → 874
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18008
      Location:182 → 525
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
      cl17238
      Location:637 → 661
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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