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    LCR Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839623, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LCR
    Official Full Name
    Galactose oxidase/kelch repeat superfamily protein
    Primary source
    TAIR:AT1G27340
    Locus tag
    AT1G27340
    See related
    Araport:AT1G27340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L21.13; F17L21_13; LEAF CURLING RESPONSIVENESS
    Summary
    Encodes a putative F-box protein that is involved in the regulation of leaf morphology.
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    Genomic context

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    See LCR in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (9495344..9498085)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene histidine kinase 3 Neighboring gene Ribosome associated membrane protein RAMP4 Neighboring gene Ribosome associated membrane protein RAMP4 Neighboring gene squamosa promoter-like 11 Neighboring gene squamosa promoter binding protein-like 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. miR394 and LCR are involved in Arabidopsis salt and drought stress responses in an abscisic acid-dependent manner. Song JB, et al. BMC Plant Biol, 2013 Dec 11. PMID 24330668, Free PMC Article
    2. Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Song JB, et al. Plant Cell Physiol, 2012 Jul. PMID 22619471
    3. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. miR394-regulated LCR abundance may allow plants to fine-tune their responses to abscissic acid and abiotic stress.
      Title: miR394 and LCR are involved in Arabidopsis salt and drought stress responses in an abscisic acid-dependent manner.
    2. miR394 and its target LCR are involved in the regulation of leaf development.
      Title: Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_102496.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf vascular tissue pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of auxin mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within simple leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Galactose oxidase/kelch repeat superfamily protein
    NP_564278.1
    • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G15710.1); Has 1110 Blast hits to 1104 proteins in 52 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9495344..9498085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102496.4 → NP_564278.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564278.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEE1, Q9FZK1
      UniProtKB/TrEMBL
      A0A178WH33, A0A5S9W4C8, A0A654EIF9
      Conserved Domains (1) summary
      smart00256
      Location:120 → 156
      FBOX; A Receptor for Ubiquitination Targets
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZK1.1

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